Visium software pipelines support TIF and JPEG images as well as pyramid TIFFs.
Underlying format is TIF but file extension is not.Underlying format is TIF and file extension is TIF or TIFF.Question: How do I test microscope image compatibility with spaceranger?Īnswer: This article outlines steps to test a tissue image without a fiducial frame through Loupe Browser manual alignment and spaceranger count and covers the following scenarios.
